Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 Gm26571-201ENSMUST00000181399 666 ntBASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Upf3aQ3ULJ3 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Upf3aQ3ULJ3 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3aQ3ULJ3 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3aQ3ULJ3 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.53■■□□□ 1.04
Upf3aQ3ULJ3 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.53■■□□□ 1.04
Upf3aQ3ULJ3 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
Upf3aQ3ULJ3 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3aQ3ULJ3 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.52■■□□□ 1.04
Upf3aQ3ULJ3 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Upf3aQ3ULJ3 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.52■■□□□ 1.04
Upf3aQ3ULJ3 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Upf3aQ3ULJ3 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Upf3aQ3ULJ3 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.51■■□□□ 1.03
Upf3aQ3ULJ3 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Gm10849-201ENSMUST00000100397 618 ntBASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Gm42642-201ENSMUST00000200683 355 ntBASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3aQ3ULJ3 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3aQ3ULJ3 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3aQ3ULJ3 Gm27405-201ENSMUST00000184201 112 ntBASIC21.49■■□□□ 1.03
Upf3aQ3ULJ3 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.49■■□□□ 1.03
Upf3aQ3ULJ3 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.49■■□□□ 1.03
Upf3aQ3ULJ3 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3aQ3ULJ3 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Gm42569-201ENSMUST00000200539 472 ntBASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3aQ3ULJ3 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3aQ3ULJ3 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Upf3aQ3ULJ3 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.46■■□□□ 1.03
Upf3aQ3ULJ3 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Upf3aQ3ULJ3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.46■■□□□ 1.03
Upf3aQ3ULJ3 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Upf3aQ3ULJ3 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Upf3aQ3ULJ3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.45■■□□□ 1.02
Upf3aQ3ULJ3 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.44■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms