Protein–RNA interactions for Protein: O88384

Vti1b, Vesicle transport through interaction with t-SNAREs homolog 1B, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1bO88384 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vti1bO88384 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vti1bO88384 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Vti1bO88384 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vti1bO88384 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.25■□□□□ 0.67
Vti1bO88384 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Vti1bO88384 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vti1bO88384 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vti1bO88384 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vti1bO88384 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.24■□□□□ 0.67
Vti1bO88384 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.24■□□□□ 0.67
Vti1bO88384 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
Vti1bO88384 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vti1bO88384 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vti1bO88384 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vti1bO88384 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vti1bO88384 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Vti1bO88384 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.23■□□□□ 0.67
Vti1bO88384 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Vti1bO88384 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vti1bO88384 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Vti1bO88384 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Vti1bO88384 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vti1bO88384 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vti1bO88384 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.22■□□□□ 0.67
Vti1bO88384 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1bO88384 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.22■□□□□ 0.67
Vti1bO88384 Iqck-206ENSMUST00000208658 2891 ntBASIC19.22■□□□□ 0.67
Vti1bO88384 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.22■□□□□ 0.67
Vti1bO88384 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1bO88384 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1bO88384 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1bO88384 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Vti1bO88384 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
Vti1bO88384 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Vti1bO88384 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.21■□□□□ 0.67
Vti1bO88384 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1bO88384 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1bO88384 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1bO88384 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1bO88384 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1bO88384 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1bO88384 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1bO88384 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Vti1bO88384 Gm15546-201ENSMUST00000122095 826 ntBASIC19.2■□□□□ 0.66
Vti1bO88384 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.2■□□□□ 0.66
Vti1bO88384 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.2■□□□□ 0.66
Vti1bO88384 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1bO88384 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1bO88384 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Vti1bO88384 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Vti1bO88384 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Vti1bO88384 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Vti1bO88384 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.19■□□□□ 0.66
Vti1bO88384 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Vti1bO88384 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vti1bO88384 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1bO88384 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vti1bO88384 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.18■□□□□ 0.66
Vti1bO88384 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Vti1bO88384 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.18■□□□□ 0.66
Vti1bO88384 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1bO88384 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1bO88384 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1bO88384 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Vti1bO88384 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms