Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm19178-201ENSMUST00000217524 1819 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm15329-201ENSMUST00000121408 155 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm15549-201ENSMUST00000121595 622 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm7666-201ENSMUST00000146631 819 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Olfml3-204ENSMUST00000169286 874 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm2517-201ENSMUST00000215651 348 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm7395-201ENSMUST00000216059 1045 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 AC122408.1-201ENSMUST00000218949 218 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 AC131330.1-201ENSMUST00000227814 1015 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ddx56Q9D0R4 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm26848-201ENSMUST00000181052 2467 ntTSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm5171-201ENSMUST00000214944 1415 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 n-R5s64-201ENSMUST00000102019 119 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm12165-201ENSMUST00000117047 342 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm15617-201ENSMUST00000118973 771 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm12129-201ENSMUST00000120104 1147 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm9353-201ENSMUST00000200472 604 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm43852-201ENSMUST00000202098 917 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm44270-201ENSMUST00000203084 1234 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm8574-201ENSMUST00000203207 924 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm17825-201ENSMUST00000206836 794 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm9445-201ENSMUST00000207454 1285 ntBASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ddx56Q9D0R4 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 AC109214.1-201ENSMUST00000219520 1372 ntBASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ddx56Q9D0R4 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms