Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm9796-201ENSMUST00000062249 2250 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Cldn34d-201ENSMUST00000114054 1003 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm12998-201ENSMUST00000122445 789 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Crem-229ENSMUST00000151084 957 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm22334-201ENSMUST00000158070 133 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm20528-202ENSMUST00000174821 802 ntTSL 3 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm4310-201ENSMUST00000177847 889 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Odaph-201ENSMUST00000178614 760 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm45118-201ENSMUST00000208928 825 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC9.15□□□□□ -0.94
Hoxd3P09027 AC113082.1-201ENSMUST00000217324 327 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC9.15□□□□□ -0.94
Hoxd3P09027 AC154680.1-201ENSMUST00000224376 859 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 1700111E14Rik-201ENSMUST00000031863 908 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Ptprm-203ENSMUST00000224091 3773 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm44152-201ENSMUST00000205007 1691 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Gm7224-201ENSMUST00000121359 2066 ntBASIC9.15□□□□□ -0.94
Hoxd3P09027 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hoxd3P09027 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC9.15□□□□□ -0.95
Hoxd3P09027 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC9.15□□□□□ -0.95
Hoxd3P09027 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.95
Hoxd3P09027 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC9.15□□□□□ -0.95
Hoxd3P09027 AC123738.2-201ENSMUST00000223791 1899 ntBASIC9.15□□□□□ -0.95
Hoxd3P09027 Olfr955-203ENSMUST00000220176 1452 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.95
Hoxd3P09027 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.95
Hoxd3P09027 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Hoxd3P09027 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm7647-201ENSMUST00000200996 1389 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm45177-201ENSMUST00000209104 2307 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC9.14□□□□□ -0.95
Hoxd3P09027 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC9.14□□□□□ -0.95
Hoxd3P09027 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
Hoxd3P09027 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Cldn16-201ENSMUST00000115302 950 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm5530-201ENSMUST00000117185 985 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm15529-201ENSMUST00000121833 994 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm6397-201ENSMUST00000161973 1069 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm22906-201ENSMUST00000175191 250 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm5523-201ENSMUST00000180415 997 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm21301-201ENSMUST00000189476 699 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm18382-201ENSMUST00000194394 582 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm43507-201ENSMUST00000196411 675 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm42599-201ENSMUST00000201308 469 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm45845-201ENSMUST00000207326 582 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm7688-201ENSMUST00000212857 337 ntBASIC9.14□□□□□ -0.95
Hoxd3P09027 Gm6980-201ENSMUST00000214327 1003 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms