Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm43622-201ENSMUST00000200140 2019 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
ClpbQ60649 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 AC154537.1-201ENSMUST00000226101 1304 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC10.96□□□□□ -0.65
ClpbQ60649 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC10.96□□□□□ -0.65
ClpbQ60649 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
ClpbQ60649 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm28937-201ENSMUST00000185413 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm29400-201ENSMUST00000187208 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm28662-201ENSMUST00000188446 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm28251-201ENSMUST00000188835 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm37835-201ENSMUST00000193305 361 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm37318-201ENSMUST00000194325 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm38017-201ENSMUST00000194768 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm37287-201ENSMUST00000195449 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Gm37793-201ENSMUST00000195548 695 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC10.96□□□□□ -0.65
ClpbQ60649 AC125486.1-201ENSMUST00000218701 320 ntBASIC10.96□□□□□ -0.65
ClpbQ60649 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
ClpbQ60649 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
ClpbQ60649 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Gm42463-201ENSMUST00000198041 4886 ntBASIC10.96□□□□□ -0.66
ClpbQ60649 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
ClpbQ60649 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
ClpbQ60649 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm45199-201ENSMUST00000207640 1507 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm13347-201ENSMUST00000120298 1353 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm12579-201ENSMUST00000118040 783 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Gm11783-201ENSMUST00000119549 885 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm12176-201ENSMUST00000121420 875 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
ClpbQ60649 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Gm10109-202ENSMUST00000206890 1211 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Gm6108-201ENSMUST00000208365 367 ntBASIC10.95□□□□□ -0.66
ClpbQ60649 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
ClpbQ60649 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
ClpbQ60649 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
ClpbQ60649 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms