Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm43773-201ENSMUST00000198548 2162 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm14395-201ENSMUST00000120494 563 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Gm15549-201ENSMUST00000121595 622 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC13.23□□□□□ -0.29
Traf1P39428 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm44158-201ENSMUST00000203881 505 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC13.23□□□□□ -0.29
Traf1P39428 AC166341.2-201ENSMUST00000220571 120 ntBASIC13.23□□□□□ -0.29
Traf1P39428 AC131586.1-201ENSMUST00000228844 2964 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm4900-201ENSMUST00000222046 1628 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Gm18262-201ENSMUST00000222560 1946 ntBASIC13.23□□□□□ -0.29
Traf1P39428 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC13.23□□□□□ -0.29
Traf1P39428 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC13.22□□□□□ -0.29
Traf1P39428 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC13.22□□□□□ -0.29
Traf1P39428 Gm14071-201ENSMUST00000117817 509 ntBASIC13.22□□□□□ -0.29
Traf1P39428 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC13.22□□□□□ -0.29
Traf1P39428 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Gm29155-201ENSMUST00000185910 269 ntBASIC13.22□□□□□ -0.29
Traf1P39428 Gm28388-201ENSMUST00000186262 437 ntBASIC13.22□□□□□ -0.29
Traf1P39428 Gm37826-201ENSMUST00000195329 322 ntBASIC13.22□□□□□ -0.29
Traf1P39428 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC13.22□□□□□ -0.29
Traf1P39428 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC13.22□□□□□ -0.29
Traf1P39428 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC13.22□□□□□ -0.29
Traf1P39428 Gm45594-201ENSMUST00000211717 241 ntBASIC13.22□□□□□ -0.29
Traf1P39428 Gm5468-202ENSMUST00000227851 682 ntBASIC13.22□□□□□ -0.29
Traf1P39428 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Traf1P39428 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Traf1P39428 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC13.22□□□□□ -0.29
Traf1P39428 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Traf1P39428 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Traf1P39428 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC13.21□□□□□ -0.29
Traf1P39428 Gm37859-201ENSMUST00000195529 2173 ntBASIC13.21□□□□□ -0.29
Traf1P39428 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Traf1P39428 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Gm5740-201ENSMUST00000211003 1857 ntBASIC13.21□□□□□ -0.29
Traf1P39428 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC13.21□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms