Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ddx55Q6ZPL9 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Ddx55Q6ZPL9 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ddx55Q6ZPL9 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ddx55Q6ZPL9 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ddx55Q6ZPL9 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Magea2-202ENSMUST00000112559 1302 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm14052-201ENSMUST00000121434 1031 ntBASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm16459-201ENSMUST00000121443 686 ntBASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 AC129975.1-201ENSMUST00000224816 592 ntBASIC13□□□□□ -0.33
Ddx55Q6ZPL9 AC137871.1-201ENSMUST00000228278 475 ntBASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Mir326-201ENSMUST00000083637 95 ntBASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx55Q6ZPL9 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm6170-201ENSMUST00000187672 1388 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm15625-201ENSMUST00000117617 1093 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm3329-201ENSMUST00000159873 556 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm23647-201ENSMUST00000175042 109 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Rn5s-201ENSMUST00000177555 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s108-201ENSMUST00000177575 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s121-201ENSMUST00000177589 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s146-201ENSMUST00000177889 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm22109-201ENSMUST00000177995 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm22291-201ENSMUST00000178027 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s141-201ENSMUST00000178066 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm23284-201ENSMUST00000178069 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s100-201ENSMUST00000178106 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s111-201ENSMUST00000178203 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s105-201ENSMUST00000178499 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s149-201ENSMUST00000178520 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s103-201ENSMUST00000178755 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s123-201ENSMUST00000178804 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s142-201ENSMUST00000178820 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s144-201ENSMUST00000178859 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s139-201ENSMUST00000178975 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s134-201ENSMUST00000178983 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s136-201ENSMUST00000179080 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm25018-201ENSMUST00000179081 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s104-201ENSMUST00000179107 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s113-201ENSMUST00000179143 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s133-201ENSMUST00000179275 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 n-R5s117-201ENSMUST00000179431 119 ntBASIC12.99□□□□□ -0.33
Ddx55Q6ZPL9 Gm25212-201ENSMUST00000179432 119 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms