Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm26927-201ENSMUST00000182385 965 ntBASIC9.43□□□□□ -0.9
Hmgb3O54879 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hmgb3O54879 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC9.43□□□□□ -0.9
Hmgb3O54879 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Lect2-202ENSMUST00000225183 823 ntBASIC9.43□□□□□ -0.9
Hmgb3O54879 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC9.43□□□□□ -0.9
Hmgb3O54879 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Alms1-205ENSMUST00000213058 11163 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Nckap5-208ENSMUST00000161954 7090 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Plekha7-201ENSMUST00000084664 4312 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm18806-201ENSMUST00000207607 1775 ntBASIC9.42□□□□□ -0.9
Hmgb3O54879 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Baz2a-208ENSMUST00000220049 8443 ntAPPRIS P2 TSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 AC153380.1-201ENSMUST00000214959 2364 ntBASIC9.42□□□□□ -0.9
Hmgb3O54879 Rpa1-202ENSMUST00000092907 5077 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Pkd1-201ENSMUST00000035565 14164 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm13875-201ENSMUST00000120162 282 ntBASIC9.42□□□□□ -0.9
Hmgb3O54879 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm45059-201ENSMUST00000205558 1077 ntBASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC9.42□□□□□ -0.9
Hmgb3O54879 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Tecpr2-201ENSMUST00000165978 7778 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 AC154171.2-201ENSMUST00000225219 2652 ntBASIC9.42□□□□□ -0.9
Hmgb3O54879 Ppm1f-201ENSMUST00000027373 4922 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Gm19327-201ENSMUST00000220651 3271 ntBASIC9.42□□□□□ -0.9
Hmgb3O54879 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Xpo7-201ENSMUST00000022696 4472 ntAPPRIS P2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Efcab6-207ENSMUST00000156187 5012 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Kif26b-202ENSMUST00000161017 13749 ntAPPRIS P2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hmgb3O54879 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC9.42□□□□□ -0.9
Hmgb3O54879 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Sulf2-202ENSMUST00000109249 4580 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gpr155-204ENSMUST00000112044 4201 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm7722-201ENSMUST00000120646 741 ntBASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm3890-201ENSMUST00000182416 207 ntBASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm29649-201ENSMUST00000185649 419 ntBASIC9.41□□□□□ -0.9
Hmgb3O54879 Gtpbp10-211ENSMUST00000198799 648 ntBASIC9.41□□□□□ -0.9
Hmgb3O54879 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 147.5 ms