Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm6157-201ENSMUST00000199935 1897 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm43152-201ENSMUST00000202495 1638 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm14213-201ENSMUST00000119778 768 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Mir1905-201ENSMUST00000122779 82 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm25830-201ENSMUST00000158923 132 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm24809-201ENSMUST00000175318 271 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Mrip-ps-201ENSMUST00000184613 940 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm44216-201ENSMUST00000203942 157 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm6390-201ENSMUST00000215034 589 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 AC154176.1-201ENSMUST00000225897 220 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm8181-201ENSMUST00000062242 669 ntBASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Gm1995-201ENSMUST00000220838 2602 ntBASIC15.64■□□□□ 0.1
Usp40Q8BWR4 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm44755-201ENSMUST00000207830 2102 ntBASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm12389-201ENSMUST00000117696 418 ntBASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm44814-201ENSMUST00000207018 434 ntBASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm3433-201ENSMUST00000210149 1058 ntBASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 AC124397.2-201ENSMUST00000225575 2215 ntBASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Usp40Q8BWR4 Btrc-209ENSMUST00000224478 2194 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Snord17-201ENSMUST00000104526 238 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Gm25562-201ENSMUST00000104608 133 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Gm22846-201ENSMUST00000157706 270 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Gm18706-201ENSMUST00000210053 1066 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Gm8255-201ENSMUST00000218693 305 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 AC130477.1-201ENSMUST00000226982 420 ntBASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Usp40Q8BWR4 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Usp40Q8BWR4 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
Usp40Q8BWR4 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms