Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm44506-201ENSMUST00000206278 965 ntBASIC14.46□□□□□ -0.09
Trim58Q5NCC9 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm8342-201ENSMUST00000209839 757 ntBASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm5996-201ENSMUST00000211110 718 ntBASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm7551-201ENSMUST00000089593 1074 ntBASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Gm5171-201ENSMUST00000214944 1415 ntBASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim58Q5NCC9 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim58Q5NCC9 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 BC043934-202ENSMUST00000185694 2356 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Mir680-2-201ENSMUST00000102163 110 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm23251-201ENSMUST00000103773 110 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm37835-201ENSMUST00000193305 361 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm38140-201ENSMUST00000193617 2755 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm6905-201ENSMUST00000205729 511 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm18642-201ENSMUST00000206642 1400 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Mir433-201ENSMUST00000093564 124 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm9035-201ENSMUST00000218318 1697 ntBASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Trim58Q5NCC9 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Gm45053-201ENSMUST00000206112 2499 ntBASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 AC155245.1-201ENSMUST00000222266 1804 ntBASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Gm22920-201ENSMUST00000102175 109 ntBASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Gm12217-201ENSMUST00000118858 696 ntBASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Gm22846-201ENSMUST00000157706 270 ntBASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim58Q5NCC9 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms