Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm45677-201ENSMUST00000209975 1341 ntBASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm7851-201ENSMUST00000117574 323 ntBASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm29499-201ENSMUST00000189151 486 ntBASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm28329-201ENSMUST00000191208 689 ntBASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm29171-201ENSMUST00000191397 486 ntBASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm7150-201ENSMUST00000122032 981 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm29199-201ENSMUST00000187766 775 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm44008-201ENSMUST00000204345 412 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm5369-201ENSMUST00000217499 588 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Ntng1-201ENSMUST00000051253 327 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Ddx56Q9D0R4 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx56Q9D0R4 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms