Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm43860-201ENSMUST00000201742 2705 ntBASIC12.15□□□□□ -0.46
Usp11Q99K46 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm8343-201ENSMUST00000182705 994 ntBASIC12.15□□□□□ -0.46
Usp11Q99K46 Mir7677-201ENSMUST00000184226 67 ntBASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm38114-201ENSMUST00000191877 1232 ntBASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.15□□□□□ -0.46
Usp11Q99K46 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Gm38140-201ENSMUST00000193617 2755 ntBASIC12.15□□□□□ -0.46
Usp11Q99K46 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp11Q99K46 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
Usp11Q99K46 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Usp11Q99K46 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC12.15□□□□□ -0.47
Usp11Q99K46 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.14□□□□□ -0.47
Usp11Q99K46 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.14□□□□□ -0.47
Usp11Q99K46 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.14□□□□□ -0.47
Usp11Q99K46 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
Usp11Q99K46 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Gm43184-201ENSMUST00000197247 542 ntBASIC12.14□□□□□ -0.47
Usp11Q99K46 Gm4157-201ENSMUST00000211647 679 ntBASIC12.14□□□□□ -0.47
Usp11Q99K46 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp11Q99K46 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp11Q99K46 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 CU062626.3-201ENSMUST00000225522 1411 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm7857-201ENSMUST00000117957 358 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm16505-201ENSMUST00000179981 232 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm28450-201ENSMUST00000187349 638 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC12.13□□□□□ -0.47
Usp11Q99K46 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Gm5705-201ENSMUST00000066241 711 ntBASIC12.13□□□□□ -0.47
Usp11Q99K46 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Usp11Q99K46 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp11Q99K46 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms