Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm15329-201ENSMUST00000121408 155 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm34023-201ENSMUST00000195539 217 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm42657-201ENSMUST00000201746 211 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm17825-201ENSMUST00000206836 794 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm10752-201ENSMUST00000218348 729 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm19046-201ENSMUST00000221263 1298 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Prrxl1-205ENSMUST00000228878 723 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm6655-201ENSMUST00000201932 1309 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 AC166574.4-201ENSMUST00000227165 1937 ntBASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubfd1Q78JW9 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm43075-201ENSMUST00000198613 3905 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm14395-201ENSMUST00000120494 563 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm24398-201ENSMUST00000157870 109 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm37284-201ENSMUST00000193607 539 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 CT025553.1-201ENSMUST00000226292 299 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm23680-201ENSMUST00000083162 164 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubfd1Q78JW9 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ubfd1Q78JW9 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 69.9 ms