Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.41
RaraP11416 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
RaraP11416 Gm15207-201ENSMUST00000119259 442 ntBASIC12.46□□□□□ -0.41
RaraP11416 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.46□□□□□ -0.41
RaraP11416 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.46□□□□□ -0.41
RaraP11416 Gm3961-201ENSMUST00000204425 994 ntBASIC12.46□□□□□ -0.41
RaraP11416 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC12.46□□□□□ -0.41
RaraP11416 Gm270-201ENSMUST00000223010 976 ntBASIC12.46□□□□□ -0.41
RaraP11416 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
RaraP11416 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
RaraP11416 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Gm5740-201ENSMUST00000211003 1857 ntBASIC12.46□□□□□ -0.42
RaraP11416 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RaraP11416 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
RaraP11416 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
RaraP11416 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Gm43522-201ENSMUST00000196697 1922 ntBASIC12.45□□□□□ -0.42
RaraP11416 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 AC124577.2-201ENSMUST00000217413 2420 ntBASIC12.45□□□□□ -0.42
RaraP11416 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.45□□□□□ -0.42
RaraP11416 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
RaraP11416 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC12.45□□□□□ -0.42
RaraP11416 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC12.45□□□□□ -0.42
RaraP11416 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.45□□□□□ -0.42
RaraP11416 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC12.45□□□□□ -0.42
RaraP11416 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Gm3332-201ENSMUST00000189337 928 ntBASIC12.45□□□□□ -0.42
RaraP11416 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.45□□□□□ -0.42
RaraP11416 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
RaraP11416 Olfr812-202ENSMUST00000203571 1232 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
RaraP11416 Gm45113-201ENSMUST00000207518 165 ntBASIC12.45□□□□□ -0.42
RaraP11416 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
RaraP11416 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.45□□□□□ -0.42
RaraP11416 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.45□□□□□ -0.42
RaraP11416 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Gm19178-201ENSMUST00000217524 1819 ntBASIC12.45□□□□□ -0.42
RaraP11416 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.45□□□□□ -0.42
RaraP11416 Gm43622-201ENSMUST00000200140 2019 ntBASIC12.45□□□□□ -0.42
RaraP11416 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC12.45□□□□□ -0.42
RaraP11416 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.45□□□□□ -0.42
RaraP11416 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RaraP11416 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
RaraP11416 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
RaraP11416 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
RaraP11416 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Gm37580-201ENSMUST00000192408 2800 ntBASIC12.44□□□□□ -0.42
RaraP11416 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC12.44□□□□□ -0.42
RaraP11416 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
RaraP11416 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
RaraP11416 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Gm23949-201ENSMUST00000104027 127 ntBASIC12.44□□□□□ -0.42
RaraP11416 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
RaraP11416 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC12.44□□□□□ -0.42
RaraP11416 Gm12857-201ENSMUST00000117678 592 ntBASIC12.44□□□□□ -0.42
RaraP11416 Gm12380-201ENSMUST00000119012 544 ntBASIC12.44□□□□□ -0.42
RaraP11416 Gm11783-201ENSMUST00000119549 885 ntBASIC12.44□□□□□ -0.42
RaraP11416 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Gm24749-201ENSMUST00000157838 343 ntBASIC12.44□□□□□ -0.42
RaraP11416 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
RaraP11416 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms