Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Trim54Q9ERP3 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm3671-201ENSMUST00000182463 1007 ntBASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm19091-201ENSMUST00000208120 978 ntBASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm9139-201ENSMUST00000218817 700 ntBASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm25517-201ENSMUST00000083865 134 ntBASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim54Q9ERP3 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm25063-201ENSMUST00000104666 94 ntBASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm12628-201ENSMUST00000122193 382 ntBASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Mir6407-201ENSMUST00000184510 101 ntBASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm17825-201ENSMUST00000206836 794 ntBASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm5996-201ENSMUST00000211110 718 ntBASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim54Q9ERP3 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms