Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Fam186a-202ENSMUST00000100209 9334 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 AC115891.3-201ENSMUST00000219161 2472 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Otog-201ENSMUST00000164538 10043 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Gm21115-201ENSMUST00000187565 2578 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Lire1P11260 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Lire1P11260 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Gm13296-201ENSMUST00000117854 997 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.06□□□□□ -0.64
Lire1P11260 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC11.06□□□□□ -0.64
Lire1P11260 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.06□□□□□ -0.64
Lire1P11260 Gm8546-201ENSMUST00000178288 1264 ntBASIC11.06□□□□□ -0.64
Lire1P11260 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Gm28450-201ENSMUST00000187349 638 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Rprl1-202ENSMUST00000198476 238 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC11.06□□□□□ -0.64
Lire1P11260 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.06□□□□□ -0.64
Lire1P11260 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 AC154680.1-201ENSMUST00000224376 859 ntBASIC11.06□□□□□ -0.64
Lire1P11260 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Lire1P11260 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Mapkap1-203ENSMUST00000113126 3018 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Qars-203ENSMUST00000134939 2374 ntTSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Lire1P11260 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Gm37608-201ENSMUST00000195696 1880 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Lire1P11260 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 AC154262.2-202ENSMUST00000225158 1331 ntBASIC11.06□□□□□ -0.64
Lire1P11260 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lire1P11260 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Cacna2d4-201ENSMUST00000037434 5803 ntAPPRIS P3 TSL 2 BASIC11.05□□□□□ -0.64
Lire1P11260 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Lrsam1-201ENSMUST00000028132 3981 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.05□□□□□ -0.64
Lire1P11260 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.05□□□□□ -0.64
Lire1P11260 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Lire1P11260 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Lire1P11260 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Lire1P11260 Gm22334-201ENSMUST00000158070 133 ntBASIC11.05□□□□□ -0.64
Lire1P11260 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms