Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm26286-201ENSMUST00000104166 134 ntBASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Mir5120-201ENSMUST00000175020 78 ntBASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 AU022133-201ENSMUST00000200601 873 ntBASIC10.92□□□□□ -0.66
Trim3Q9R1R2 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm38292-201ENSMUST00000192646 3045 ntBASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim3Q9R1R2 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm17230-201ENSMUST00000171194 3942 ntBASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm5525-201ENSMUST00000190438 1312 ntBASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm6039-201ENSMUST00000121667 1250 ntBASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Mir5132-201ENSMUST00000175166 71 ntBASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Mir7677-201ENSMUST00000184226 67 ntBASIC10.91□□□□□ -0.66
Trim3Q9R1R2 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gm43773-201ENSMUST00000198548 2162 ntBASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim3Q9R1R2 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm42141-201ENSMUST00000196534 2172 ntBASIC10.9□□□□□ -0.66
Trim3Q9R1R2 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms