Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm13916-201ENSMUST00000117368 628 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm3329-201ENSMUST00000159873 556 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm6108-201ENSMUST00000208365 367 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm4978-201ENSMUST00000071565 801 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm18806-201ENSMUST00000207607 1775 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Erich3-203ENSMUST00000189969 3460 ntBASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx56Q9D0R4 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 AC129336.1-201ENSMUST00000220224 2277 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm23200-201ENSMUST00000104379 132 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm12579-201ENSMUST00000118040 783 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm12997-201ENSMUST00000120207 640 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm11450-201ENSMUST00000121144 333 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm42682-201ENSMUST00000198349 1265 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm37122-201ENSMUST00000195313 1567 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms