Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm44190-201ENSMUST00000205083 1401 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC12.22□□□□□ -0.45
Shmt1P50431 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm15549-201ENSMUST00000121595 622 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC12.22□□□□□ -0.45
Shmt1P50431 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC12.22□□□□□ -0.45
Shmt1P50431 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC12.22□□□□□ -0.45
Shmt1P50431 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm8365-201ENSMUST00000197334 648 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Gm43830-201ENSMUST00000198760 1067 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Gm43852-201ENSMUST00000202098 917 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC12.22□□□□□ -0.45
Shmt1P50431 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC12.22□□□□□ -0.45
Shmt1P50431 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Shmt1P50431 Snora73b-201ENSMUST00000083419 205 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC12.22□□□□□ -0.45
Shmt1P50431 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC12.22□□□□□ -0.45
Shmt1P50431 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Shmt1P50431 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Shmt1P50431 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Shmt1P50431 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Gm15782-201ENSMUST00000121073 445 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Gm15329-201ENSMUST00000121408 155 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Shmt1P50431 Gm43520-201ENSMUST00000197996 164 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Gm44980-201ENSMUST00000205826 314 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Gm9463-201ENSMUST00000206707 601 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Gm45550-201ENSMUST00000209380 946 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Gm5996-201ENSMUST00000211110 718 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.21□□□□□ -0.45
Shmt1P50431 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Shmt1P50431 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Shmt1P50431 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.21□□□□□ -0.46
Shmt1P50431 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Shmt1P50431 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms