Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm16486-201ENSMUST00000212436 4584 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Hmgb3O54879 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm11439-201ENSMUST00000118598 409 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm13342-201ENSMUST00000121055 207 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm11918-201ENSMUST00000121660 179 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm6244-201ENSMUST00000178732 841 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm24196-201ENSMUST00000179161 110 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Hmgb3O54879 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm45384-201ENSMUST00000210451 277 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm5626-201ENSMUST00000222151 1058 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gm37368-201ENSMUST00000193173 3212 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Daam1-201ENSMUST00000085299 5879 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Nfkbiz-201ENSMUST00000036273 4115 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Plec-205ENSMUST00000073418 15455 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
Hmgb3O54879 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
Hmgb3O54879 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Gpr156-201ENSMUST00000061274 4581 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Arsb-201ENSMUST00000091403 4038 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.88
Hmgb3O54879 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.88
Hmgb3O54879 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
Hmgb3O54879 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC9.52□□□□□ -0.88
Hmgb3O54879 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.88
Hmgb3O54879 Gm18782-201ENSMUST00000209023 1399 ntBASIC9.52□□□□□ -0.88
Hmgb3O54879 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.88
Hmgb3O54879 C2cd5-201ENSMUST00000087485 4265 ntTSL 5 BASIC9.52□□□□□ -0.88
Hmgb3O54879 Celf1-205ENSMUST00000111449 4441 ntAPPRIS ALT1 TSL 1 (best) BASIC9.52□□□□□ -0.88
Hmgb3O54879 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
Hmgb3O54879 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Pcdh15-226ENSMUST00000151116 6287 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Prickle2-201ENSMUST00000032093 7754 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Card14-202ENSMUST00000106250 4206 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Synpo2-203ENSMUST00000106427 6937 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Unc79-208ENSMUST00000179002 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC9.52□□□□□ -0.89
Hmgb3O54879 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm24644-201ENSMUST00000157114 139 ntBASIC9.52□□□□□ -0.89
Hmgb3O54879 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC9.52□□□□□ -0.89
Hmgb3O54879 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm43622-201ENSMUST00000200140 2019 ntBASIC9.52□□□□□ -0.89
Hmgb3O54879 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm7067-201ENSMUST00000207698 1249 ntBASIC9.52□□□□□ -0.89
Hmgb3O54879 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Ralgps1-201ENSMUST00000042615 6029 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 149 ms