Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clk3O35492 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clk3O35492 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Clk3O35492 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Clk3O35492 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clk3O35492 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.33■□□□□ 0.68
Clk3O35492 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clk3O35492 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.33■□□□□ 0.68
Clk3O35492 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clk3O35492 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clk3O35492 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.33■□□□□ 0.68
Clk3O35492 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
Clk3O35492 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Clk3O35492 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Clk3O35492 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Clk3O35492 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Clk3O35492 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.32■□□□□ 0.68
Clk3O35492 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.32■□□□□ 0.68
Clk3O35492 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Clk3O35492 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Clk3O35492 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Clk3O35492 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk3O35492 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk3O35492 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Clk3O35492 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.3■□□□□ 0.68
Clk3O35492 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk3O35492 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Clk3O35492 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk3O35492 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk3O35492 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
Clk3O35492 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.29■□□□□ 0.68
Clk3O35492 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Gm5812-201ENSMUST00000061073 957 ntBASIC19.29■□□□□ 0.68
Clk3O35492 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk3O35492 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Clk3O35492 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.28■□□□□ 0.68
Clk3O35492 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Clk3O35492 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Clk3O35492 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.28■□□□□ 0.68
Clk3O35492 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Clk3O35492 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk3O35492 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk3O35492 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk3O35492 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.27■□□□□ 0.68
Clk3O35492 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk3O35492 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk3O35492 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Clk3O35492 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Clk3O35492 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk3O35492 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Clk3O35492 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Clk3O35492 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Clk3O35492 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.27■□□□□ 0.67
Clk3O35492 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.27■□□□□ 0.67
Clk3O35492 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk3O35492 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Clk3O35492 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Clk3O35492 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk3O35492 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Clk3O35492 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk3O35492 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Clk3O35492 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Gm15546-201ENSMUST00000122095 826 ntBASIC19.25■□□□□ 0.67
Clk3O35492 Gm15820-201ENSMUST00000201566 728 ntBASIC19.25■□□□□ 0.67
Clk3O35492 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk3O35492 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms