Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm14665-201ENSMUST00000122294 557 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm19459-201ENSMUST00000176240 835 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm43962-201ENSMUST00000203898 190 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm44545-201ENSMUST00000208262 746 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm17827-201ENSMUST00000211825 742 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 D9Wsu149-201ENSMUST00000214169 594 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm7642-201ENSMUST00000216345 1809 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 AC127597.1-201ENSMUST00000225697 5711 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm43963-201ENSMUST00000203466 2488 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm5525-201ENSMUST00000190438 1312 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm24934-201ENSMUST00000103764 111 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm12165-201ENSMUST00000117047 342 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm12501-201ENSMUST00000119163 529 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm27438-201ENSMUST00000183480 110 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Mir7677-201ENSMUST00000184226 67 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm44126-201ENSMUST00000204831 514 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC13□□□□□ -0.33
Smc1aQ9CU62 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm21811-201ENSMUST00000096485 930 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm9466-201ENSMUST00000218144 2246 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC13□□□□□ -0.33
Smc1aQ9CU62 Gm17244-201ENSMUST00000192482 3416 ntBASIC13□□□□□ -0.33
Smc1aQ9CU62 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC13□□□□□ -0.33
Smc1aQ9CU62 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Gm38140-201ENSMUST00000193617 2755 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 AC123619.2-202ENSMUST00000225097 1568 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Gm11941-201ENSMUST00000119904 610 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Gm10051-201ENSMUST00000145209 414 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms