Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Cdx2P43241 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Gm12453-201ENSMUST00000121981 331 ntBASIC11□□□□□ -0.65
Cdx2P43241 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Mir6941-201ENSMUST00000184711 59 ntBASIC11□□□□□ -0.65
Cdx2P43241 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Ighv1-2-201ENSMUST00000195325 378 ntBASIC11□□□□□ -0.65
Cdx2P43241 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC11□□□□□ -0.65
Cdx2P43241 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 AC158392.3-201ENSMUST00000224271 1284 ntBASIC11□□□□□ -0.65
Cdx2P43241 AC154305.2-201ENSMUST00000225813 901 ntBASIC11□□□□□ -0.65
Cdx2P43241 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC11□□□□□ -0.65
Cdx2P43241 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Gm5053-201ENSMUST00000208361 1678 ntBASIC11□□□□□ -0.65
Cdx2P43241 Rnf17-202ENSMUST00000223627 2077 ntBASIC11□□□□□ -0.65
Cdx2P43241 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Gm4780-202ENSMUST00000215200 2644 ntBASIC11□□□□□ -0.65
Cdx2P43241 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx2P43241 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Cdx2P43241 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC10.99□□□□□ -0.65
Cdx2P43241 Gm19692-201ENSMUST00000203856 2084 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
Cdx2P43241 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC10.99□□□□□ -0.65
Cdx2P43241 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC10.99□□□□□ -0.65
Cdx2P43241 Gm12663-201ENSMUST00000118481 958 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 Gm12712-201ENSMUST00000120676 801 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC10.99□□□□□ -0.65
Cdx2P43241 Gm24809-201ENSMUST00000175318 271 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Gm37365-201ENSMUST00000193109 409 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 Gm44216-201ENSMUST00000203942 157 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC10.99□□□□□ -0.65
Cdx2P43241 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Cdx2P43241 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Cdx2P43241 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Cdx2P43241 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx2P43241 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Gm11470-201ENSMUST00000118868 1475 ntBASIC10.99□□□□□ -0.65
Cdx2P43241 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx2P43241 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 80.1 ms