Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.52□□□□□ -0.41
RaraP11416 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Rgr-203ENSMUST00000225070 4704 ntBASIC12.52□□□□□ -0.41
RaraP11416 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
RaraP11416 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Gm14723-201ENSMUST00000118686 215 ntBASIC12.51□□□□□ -0.41
RaraP11416 Gm12012-201ENSMUST00000118857 1066 ntBASIC12.51□□□□□ -0.41
RaraP11416 Gm20482-202ENSMUST00000174729 825 ntBASIC12.51□□□□□ -0.41
RaraP11416 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Gm29164-201ENSMUST00000185454 1024 ntBASIC12.51□□□□□ -0.41
RaraP11416 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Gm37666-201ENSMUST00000194110 866 ntBASIC12.51□□□□□ -0.41
RaraP11416 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC12.51□□□□□ -0.41
RaraP11416 AY036118-201ENSMUST00000200021 923 ntBASIC12.51□□□□□ -0.41
RaraP11416 Gm43966-201ENSMUST00000203301 612 ntBASIC12.51□□□□□ -0.41
RaraP11416 Rps4l-202ENSMUST00000204242 789 ntBASIC12.51□□□□□ -0.41
RaraP11416 Gm8913-201ENSMUST00000209491 641 ntBASIC12.51□□□□□ -0.41
RaraP11416 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Gm7940-201ENSMUST00000218195 769 ntBASIC12.51□□□□□ -0.41
RaraP11416 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Olfr293-201ENSMUST00000081474 1011 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
RaraP11416 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Gm10782-202ENSMUST00000223775 1480 ntBASIC12.51□□□□□ -0.41
RaraP11416 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC12.51□□□□□ -0.41
RaraP11416 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RaraP11416 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
RaraP11416 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
RaraP11416 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.5□□□□□ -0.41
RaraP11416 Gm3329-201ENSMUST00000159873 556 ntBASIC12.5□□□□□ -0.41
RaraP11416 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.5□□□□□ -0.41
RaraP11416 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC12.5□□□□□ -0.41
RaraP11416 Gm27530-201ENSMUST00000184096 98 ntBASIC12.5□□□□□ -0.41
RaraP11416 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.5□□□□□ -0.41
RaraP11416 Gm28686-201ENSMUST00000187404 609 ntBASIC12.5□□□□□ -0.41
RaraP11416 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC12.5□□□□□ -0.41
RaraP11416 Gm44364-201ENSMUST00000198368 141 ntBASIC12.5□□□□□ -0.41
RaraP11416 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms