Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Prpf40aQ9R1C7 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Prpf40aQ9R1C7 Milr1-202ENSMUST00000106794 1514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Prpf40aQ9R1C7 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm14028-201ENSMUST00000117434 479 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm14208-201ENSMUST00000119645 678 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm14441-201ENSMUST00000121960 540 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm25025-201ENSMUST00000175018 111 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm3836-201ENSMUST00000211377 1613 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
Prpf40aQ9R1C7 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm23596-201ENSMUST00000104304 132 ntBASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm12997-201ENSMUST00000120207 640 ntBASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm24990-201ENSMUST00000157406 323 ntBASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm17040-202ENSMUST00000170597 889 ntBASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.82□□□□□ -0.36
Prpf40aQ9R1C7 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Prpf40aQ9R1C7 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms