Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC10.77□□□□□ -0.69
Cd40lgP27548 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 BC043934-202ENSMUST00000185694 2356 ntBASIC10.77□□□□□ -0.69
Cd40lgP27548 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Cd40lgP27548 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC10.77□□□□□ -0.69
Cd40lgP27548 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.77□□□□□ -0.69
Cd40lgP27548 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cd40lgP27548 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm43365-201ENSMUST00000196522 2106 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm5053-201ENSMUST00000208361 1678 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Dip2c-202ENSMUST00000169960 4801 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 AC173482.6-201ENSMUST00000225889 1741 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Myo18a-203ENSMUST00000092887 7304 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm43447-201ENSMUST00000198471 1535 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm12501-201ENSMUST00000119163 529 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm5419-201ENSMUST00000119301 527 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm8343-201ENSMUST00000182705 994 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm43138-201ENSMUST00000199123 708 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm19287-201ENSMUST00000203190 358 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Olfr1347-205ENSMUST00000220413 964 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Bcl9-201ENSMUST00000046521 6102 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Son-204ENSMUST00000119368 7529 ntTSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 AC129931.1-201ENSMUST00000228865 1861 ntBASIC10.76□□□□□ -0.69
Cd40lgP27548 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Fubp1-202ENSMUST00000166984 6523 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cd40lgP27548 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC10.76□□□□□ -0.69
Cd40lgP27548 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Cd40lgP27548 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 CT009713.5-203ENSMUST00000224218 2079 ntBASIC10.75□□□□□ -0.69
Cd40lgP27548 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC10.75□□□□□ -0.69
Cd40lgP27548 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.75□□□□□ -0.69
Cd40lgP27548 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC10.75□□□□□ -0.69
Cd40lgP27548 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC10.75□□□□□ -0.69
Cd40lgP27548 Gm12380-201ENSMUST00000119012 544 ntBASIC10.75□□□□□ -0.69
Cd40lgP27548 Gm25881-201ENSMUST00000157783 103 ntBASIC10.75□□□□□ -0.69
Cd40lgP27548 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cd40lgP27548 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC10.75□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms