Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.54□□□□□ -0.4
RaraP11416 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Gm4157-201ENSMUST00000211647 679 ntBASIC12.54□□□□□ -0.4
RaraP11416 Gm17827-201ENSMUST00000211825 742 ntBASIC12.54□□□□□ -0.4
RaraP11416 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.54□□□□□ -0.4
RaraP11416 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.54□□□□□ -0.4
RaraP11416 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Gm36957-201ENSMUST00000192982 2824 ntBASIC12.54□□□□□ -0.4
RaraP11416 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC12.54□□□□□ -0.4
RaraP11416 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 AC153380.1-201ENSMUST00000214959 2364 ntBASIC12.54□□□□□ -0.4
RaraP11416 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
RaraP11416 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC12.53□□□□□ -0.4
RaraP11416 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.53□□□□□ -0.4
RaraP11416 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC12.53□□□□□ -0.4
RaraP11416 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RaraP11416 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Gm11500-201ENSMUST00000118237 601 ntBASIC12.53□□□□□ -0.4
RaraP11416 Gm13326-201ENSMUST00000118730 1011 ntBASIC12.53□□□□□ -0.4
RaraP11416 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
RaraP11416 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
RaraP11416 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Gm34767-201ENSMUST00000191813 1062 ntBASIC12.53□□□□□ -0.4
RaraP11416 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.53□□□□□ -0.4
RaraP11416 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Gm17812-201ENSMUST00000204935 318 ntBASIC12.53□□□□□ -0.4
RaraP11416 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.53□□□□□ -0.4
RaraP11416 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RaraP11416 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.53□□□□□ -0.4
RaraP11416 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RaraP11416 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RaraP11416 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RaraP11416 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RaraP11416 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RaraP11416 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC12.52□□□□□ -0.4
RaraP11416 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RaraP11416 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RaraP11416 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
RaraP11416 Gm14381-201ENSMUST00000122105 414 ntBASIC12.52□□□□□ -0.41
RaraP11416 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
RaraP11416 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Gm20865-201ENSMUST00000179095 856 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
RaraP11416 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.52□□□□□ -0.41
RaraP11416 Gm37259-201ENSMUST00000193903 849 ntBASIC12.52□□□□□ -0.41
RaraP11416 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Gm9899-201ENSMUST00000065519 555 ntBASIC12.52□□□□□ -0.41
RaraP11416 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.52□□□□□ -0.41
RaraP11416 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
RaraP11416 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RaraP11416 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms