Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 AC122811.1-201ENSMUST00000222257 2921 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm22133-201ENSMUST00000102082 109 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm23949-201ENSMUST00000104027 127 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm12217-201ENSMUST00000118858 696 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm12380-201ENSMUST00000119012 544 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm28450-201ENSMUST00000187349 638 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 CT571245.2-201ENSMUST00000218421 305 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Trim3Q9R1R2 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Rn7s1-201ENSMUST00000174924 300 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Rn7s2-201ENSMUST00000175032 300 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm26461-201ENSMUST00000175064 290 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm28071-201ENSMUST00000190355 478 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm9445-201ENSMUST00000207454 1285 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm19208-201ENSMUST00000213861 912 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 AC153954.1-201ENSMUST00000216959 255 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm18730-201ENSMUST00000218038 343 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm21027-201ENSMUST00000219300 1236 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Olfr1347-205ENSMUST00000220413 964 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 CU062626.3-201ENSMUST00000225522 1411 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm37348-201ENSMUST00000193104 1789 ntBASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Trim3Q9R1R2 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Trim3Q9R1R2 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Trim3Q9R1R2 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Trim3Q9R1R2 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Trim3Q9R1R2 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Trim3Q9R1R2 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms