Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm25072-201ENSMUST00000175233 235 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mir6998-201ENSMUST00000183343 64 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mir8093-201ENSMUST00000185043 137 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm38210-201ENSMUST00000191944 809 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm44315-201ENSMUST00000203041 219 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Olfr584-201ENSMUST00000098210 964 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm12419-201ENSMUST00000116649 636 ntBASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm23153-201ENSMUST00000175323 313 ntBASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm28324-201ENSMUST00000187913 264 ntBASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm5982-201ENSMUST00000196234 512 ntBASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm8342-201ENSMUST00000209839 757 ntBASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Gm4978-201ENSMUST00000071565 801 ntBASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sf3b1Q99NB9 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm23272-201ENSMUST00000104053 129 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm26013-201ENSMUST00000104404 119 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm11628-201ENSMUST00000117568 171 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm42657-201ENSMUST00000201746 211 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm8574-201ENSMUST00000203207 924 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sf3b1Q99NB9 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
Sf3b1Q99NB9 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.33□□□□□ -0.43
Sf3b1Q99NB9 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.33□□□□□ -0.43
Sf3b1Q99NB9 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
Sf3b1Q99NB9 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 246.8 ms