Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Gm22323-201ENSMUST00000103832 109 ntBASIC12.56□□□□□ -0.4
RaraP11416 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
RaraP11416 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
RaraP11416 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.56□□□□□ -0.4
RaraP11416 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC12.56□□□□□ -0.4
RaraP11416 Gm5616-201ENSMUST00000165252 384 ntBASIC12.56□□□□□ -0.4
RaraP11416 Gm8741-201ENSMUST00000174736 384 ntBASIC12.56□□□□□ -0.4
RaraP11416 G530012D18Rik-201ENSMUST00000178024 420 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
RaraP11416 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.56□□□□□ -0.4
RaraP11416 Gm44967-201ENSMUST00000207047 631 ntBASIC12.56□□□□□ -0.4
RaraP11416 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
RaraP11416 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Gm807-202ENSMUST00000224929 408 ntBASIC12.56□□□□□ -0.4
RaraP11416 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Adgrv1-214ENSMUST00000224088 1492 ntBASIC12.56□□□□□ -0.4
RaraP11416 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
RaraP11416 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
RaraP11416 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
RaraP11416 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC12.56□□□□□ -0.4
RaraP11416 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
RaraP11416 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.55□□□□□ -0.4
RaraP11416 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
RaraP11416 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.55□□□□□ -0.4
RaraP11416 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Gm8343-201ENSMUST00000182705 994 ntBASIC12.55□□□□□ -0.4
RaraP11416 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC12.55□□□□□ -0.4
RaraP11416 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Gm13097-201ENSMUST00000210722 397 ntBASIC12.55□□□□□ -0.4
RaraP11416 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.55□□□□□ -0.4
RaraP11416 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
RaraP11416 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
RaraP11416 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.55□□□□□ -0.4
RaraP11416 Clec4d-201ENSMUST00000032240 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.55□□□□□ -0.4
RaraP11416 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.55□□□□□ -0.4
RaraP11416 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
RaraP11416 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.54□□□□□ -0.4
RaraP11416 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 BC043934-202ENSMUST00000185694 2356 ntBASIC12.54□□□□□ -0.4
RaraP11416 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
RaraP11416 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.54□□□□□ -0.4
RaraP11416 Gm14071-201ENSMUST00000117817 509 ntBASIC12.54□□□□□ -0.4
RaraP11416 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.54□□□□□ -0.4
RaraP11416 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Gm15276-201ENSMUST00000145953 498 ntBASIC12.54□□□□□ -0.4
RaraP11416 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RaraP11416 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms