Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Col3a1P08121 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Gm25562-201ENSMUST00000104608 133 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Col3a1P08121 Gm16030-201ENSMUST00000159098 603 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Gm9353-201ENSMUST00000200472 604 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 AC122024.3-201ENSMUST00000217719 294 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 AC158392.3-201ENSMUST00000224271 1284 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Col3a1P08121 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.73□□□□□ -0.21
Col3a1P08121 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col3a1P08121 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 AC122860.2-201ENSMUST00000217967 2671 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm44755-201ENSMUST00000207830 2102 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Col3a1P08121 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm11470-201ENSMUST00000118868 1475 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm3828-201ENSMUST00000121817 257 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Gm11354-201ENSMUST00000121974 422 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC13.72□□□□□ -0.21
Col3a1P08121 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm26976-201ENSMUST00000182929 908 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 AC154537.1-201ENSMUST00000226101 1304 ntBASIC13.72□□□□□ -0.21
Col3a1P08121 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Col3a1P08121 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col3a1P08121 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.71□□□□□ -0.21
Col3a1P08121 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
Col3a1P08121 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm45776-201ENSMUST00000212366 1522 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm11560-201ENSMUST00000117567 948 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Gm13549-201ENSMUST00000118339 796 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm13445-201ENSMUST00000121664 307 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Mir1905-201ENSMUST00000122779 82 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Gm22846-201ENSMUST00000157706 270 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC13.71□□□□□ -0.21
Col3a1P08121 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC13.71□□□□□ -0.21
Col3a1P08121 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC13.71□□□□□ -0.21
Col3a1P08121 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms