Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Gm40377-201ENSMUST00000204604 2015 ntBASIC11.39□□□□□ -0.59
Chd3B1AR17 AC165351.1-201ENSMUST00000219078 2020 ntBASIC11.39□□□□□ -0.59
Chd3B1AR17 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.39□□□□□ -0.59
Chd3B1AR17 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Chd3B1AR17 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Chd3B1AR17 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 AC108858.2-201ENSMUST00000228186 1425 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Gm6771-201ENSMUST00000182716 1001 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Gm17877-201ENSMUST00000192578 814 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Gm45120-201ENSMUST00000208880 408 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 AC154257.1-202ENSMUST00000224729 843 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.38□□□□□ -0.59
Chd3B1AR17 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Chd3B1AR17 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
Chd3B1AR17 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm11675-201ENSMUST00000121873 832 ntBASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm17798-201ENSMUST00000182282 1035 ntBASIC11.37□□□□□ -0.59
Chd3B1AR17 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm8342-201ENSMUST00000209839 757 ntBASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Lgi3-203ENSMUST00000226548 1001 ntBASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Chd3B1AR17 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Chd3B1AR17 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 71.8 ms