Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm18393-201ENSMUST00000208349 1131 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Vps28Q9D1C8 AC126257.2-201ENSMUST00000215507 2300 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm13408-201ENSMUST00000119822 798 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm13935-201ENSMUST00000121859 798 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm8546-201ENSMUST00000178288 1264 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm10774-201ENSMUST00000188689 204 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm5852-201ENSMUST00000194119 1021 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm7940-201ENSMUST00000218195 769 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm43102-201ENSMUST00000201004 2324 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
Vps28Q9D1C8 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm12579-201ENSMUST00000118040 783 ntBASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC11.94□□□□□ -0.5
Vps28Q9D1C8 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm29499-201ENSMUST00000189151 486 ntBASIC11.94□□□□□ -0.5
Vps28Q9D1C8 Gm28329-201ENSMUST00000191208 689 ntBASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms