Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm8815-201ENSMUST00000173809 620 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm2383-201ENSMUST00000181461 807 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm5714-201ENSMUST00000197343 566 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm9176-201ENSMUST00000219955 1120 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Ddx56Q9D0R4 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Gm20089-201ENSMUST00000192391 2084 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Gm12266-201ENSMUST00000120311 962 ntBASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Gm8100-201ENSMUST00000182906 988 ntBASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Gm45575-201ENSMUST00000210283 548 ntBASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Gm9257-201ENSMUST00000221254 232 ntBASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ddx56Q9D0R4 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm11439-201ENSMUST00000118598 409 ntBASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm17040-202ENSMUST00000170597 889 ntBASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm5852-201ENSMUST00000194119 1021 ntBASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm45113-201ENSMUST00000207518 165 ntBASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ddx56Q9D0R4 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms