Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Brf1Q8CFK2 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Rubie-203ENSMUST00000227803 2430 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Gm20495-201ENSMUST00000173902 235 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Mir5120-201ENSMUST00000175020 78 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Gm45909-201ENSMUST00000212413 1031 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Gm38089-201ENSMUST00000193585 1514 ntBASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf1Q8CFK2 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Brf1Q8CFK2 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm26047-201ENSMUST00000157308 113 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm6397-201ENSMUST00000161973 1069 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Mir7070-201ENSMUST00000183657 86 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm26047-202ENSMUST00000198840 115 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm9555-201ENSMUST00000200908 583 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm4978-201ENSMUST00000071565 801 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm7551-201ENSMUST00000089593 1074 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Gm44573-201ENSMUST00000191753 2370 ntBASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf1Q8CFK2 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms