Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm45677-201ENSMUST00000209975 1341 ntBASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Tnfrsf9-205ENSMUST00000116257 2115 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gtf2i-219ENSMUST00000174155 4141 ntAPPRIS P4 TSL 2 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm6092-201ENSMUST00000121659 2029 ntBASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm18893-201ENSMUST00000198416 943 ntBASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm7783-201ENSMUST00000204795 781 ntBASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 AC123665.1-201ENSMUST00000228204 438 ntBASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc40Q8BI79 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Glt1d1-201ENSMUST00000118139 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm11511-201ENSMUST00000118146 540 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm13665-201ENSMUST00000120830 528 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 AA914427-201ENSMUST00000193194 1166 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm9136-201ENSMUST00000193368 454 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm38317-201ENSMUST00000195564 343 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.21□□□□□ -0.45
Ccdc40Q8BI79 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 120.8 ms