Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm17826-201ENSMUST00000189720 798 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Gm38314-201ENSMUST00000195709 625 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Gm8365-201ENSMUST00000197334 648 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Gm35960-201ENSMUST00000202712 767 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Gm8342-201ENSMUST00000209839 757 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Gm5451-201ENSMUST00000080545 579 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 AC166836.1-201ENSMUST00000219933 1795 ntBASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Ubfd1Q78JW9 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm12419-201ENSMUST00000116649 636 ntBASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm14942-201ENSMUST00000119642 336 ntBASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm11244-201ENSMUST00000121243 237 ntBASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm7741-201ENSMUST00000181445 989 ntBASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 CT009546.1-201ENSMUST00000222573 1120 ntBASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Ubfd1Q78JW9 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Gm12247-201ENSMUST00000117585 670 ntBASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Gm15615-201ENSMUST00000118876 198 ntBASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Gm11451-201ENSMUST00000118946 630 ntBASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 AC165260.2-203ENSMUST00000224237 336 ntBASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Ubfd1Q78JW9 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms