Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm18561-201ENSMUST00000206027 804 ntBASIC9.99□□□□□ -0.81
Col8a1Q00780 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC9.99□□□□□ -0.81
Col8a1Q00780 AC158388.3-202ENSMUST00000225517 775 ntBASIC9.99□□□□□ -0.81
Col8a1Q00780 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 AC154671.1-201ENSMUST00000228617 1578 ntBASIC9.99□□□□□ -0.81
Col8a1Q00780 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 AC164702.1-201ENSMUST00000220135 2212 ntBASIC9.99□□□□□ -0.81
Col8a1Q00780 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC9.99□□□□□ -0.81
Col8a1Q00780 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Col8a1Q00780 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
Col8a1Q00780 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm11560-201ENSMUST00000117567 948 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm14270-201ENSMUST00000118388 846 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC9.98□□□□□ -0.81
Col8a1Q00780 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm7985-201ENSMUST00000183329 981 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm18801-201ENSMUST00000186616 536 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm19587-201ENSMUST00000191395 545 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm37852-201ENSMUST00000193027 350 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm42816-201ENSMUST00000198433 325 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm18711-201ENSMUST00000199341 750 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm43912-201ENSMUST00000204352 538 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Gm43334-201ENSMUST00000197740 1318 ntBASIC9.98□□□□□ -0.81
Col8a1Q00780 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
Col8a1Q00780 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Col8a1Q00780 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
Col8a1Q00780 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms