Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Cdx2P43241 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.07□□□□□ -0.64
Cdx2P43241 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Gm6322-201ENSMUST00000118789 1004 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Gm14213-201ENSMUST00000119778 768 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC11.06□□□□□ -0.64
Cdx2P43241 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC11.06□□□□□ -0.64
Cdx2P43241 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Gm17709-201ENSMUST00000174536 1096 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Gm4895-201ENSMUST00000181646 1137 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Gm7719-201ENSMUST00000182374 975 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC11.06□□□□□ -0.64
Cdx2P43241 Gm5700-201ENSMUST00000191483 989 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Gm37284-201ENSMUST00000193607 539 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC11.06□□□□□ -0.64
Cdx2P43241 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 AC130477.1-201ENSMUST00000226982 420 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Cdx2P43241 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.06□□□□□ -0.64
Cdx2P43241 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx2P43241 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Cdx2P43241 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm44241-201ENSMUST00000203230 1662 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm14274-201ENSMUST00000117182 615 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm11619-201ENSMUST00000117474 237 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm12218-201ENSMUST00000117666 399 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm11500-201ENSMUST00000118237 601 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm7541-201ENSMUST00000118361 535 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm11979-201ENSMUST00000119629 743 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm13445-201ENSMUST00000121664 307 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC11.05□□□□□ -0.64
Cdx2P43241 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm20495-201ENSMUST00000173902 235 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm23694-201ENSMUST00000179335 110 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
Cdx2P43241 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm18499-201ENSMUST00000220808 1021 ntBASIC11.05□□□□□ -0.64
Cdx2P43241 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Cdx2P43241 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Cdx2P43241 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx2P43241 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms