Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC13.53□□□□□ -0.24
Traf1P39428 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Traf1P39428 AC160410.1-201ENSMUST00000219298 1972 ntBASIC13.52□□□□□ -0.24
Traf1P39428 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Traf1P39428 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Traf1P39428 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Traf1P39428 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Traf1P39428 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Traf1P39428 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Traf1P39428 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Gm12208-201ENSMUST00000122004 163 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC13.52□□□□□ -0.25
Traf1P39428 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC13.52□□□□□ -0.25
Traf1P39428 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC13.52□□□□□ -0.25
Traf1P39428 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC13.52□□□□□ -0.25
Traf1P39428 Gm45113-201ENSMUST00000207518 165 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Gm8285-201ENSMUST00000208293 759 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC13.52□□□□□ -0.25
Traf1P39428 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC13.52□□□□□ -0.25
Traf1P39428 Gm1840-201ENSMUST00000051687 1432 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Traf1P39428 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.52□□□□□ -0.25
Traf1P39428 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Traf1P39428 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13.51□□□□□ -0.25
Traf1P39428 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Traf1P39428 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Traf1P39428 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
Traf1P39428 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Gm11949-201ENSMUST00000117640 372 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Gm15725-201ENSMUST00000119947 1090 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Gm12516-201ENSMUST00000120819 385 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Gm9645-201ENSMUST00000197131 792 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 CT485606.1-201ENSMUST00000213187 878 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Gm2517-201ENSMUST00000215651 348 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC13.51□□□□□ -0.25
Traf1P39428 AC153505.1-201ENSMUST00000218819 1071 ntBASIC13.51□□□□□ -0.25
Traf1P39428 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Traf1P39428 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Gm6430-201ENSMUST00000054664 1248 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Gm44913-201ENSMUST00000208060 2990 ntBASIC13.51□□□□□ -0.25
Traf1P39428 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms