Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Abcb8-203ENSMUST00000115077 3074 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Gm14263-201ENSMUST00000117955 746 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Mir6979-201ENSMUST00000183927 56 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC11.17□□□□□ -0.62
Lire1P11260 Gm43378-201ENSMUST00000199336 582 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Gm42997-202ENSMUST00000200321 985 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.17□□□□□ -0.62
Lire1P11260 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC11.17□□□□□ -0.62
Lire1P11260 AC154305.4-201ENSMUST00000224520 614 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.17□□□□□ -0.62
Lire1P11260 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Slc25a45-201ENSMUST00000025732 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.17□□□□□ -0.62
Lire1P11260 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Lire1P11260 CAAA01216754.1-201ENSMUST00000215882 1836 ntBASIC11.16□□□□□ -0.62
Lire1P11260 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.16□□□□□ -0.62
Lire1P11260 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
Lire1P11260 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC11.16□□□□□ -0.62
Lire1P11260 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Myo5a-206ENSMUST00000136731 6480 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Lire1P11260 Gm8036-201ENSMUST00000118089 1718 ntBASIC11.16□□□□□ -0.62
Lire1P11260 Cfap61-202ENSMUST00000118002 3230 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Lire1P11260 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Lire1P11260 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11.16□□□□□ -0.62
Lire1P11260 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.16□□□□□ -0.62
Lire1P11260 Gm44405-201ENSMUST00000198952 126 ntBASIC11.16□□□□□ -0.62
Lire1P11260 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.16□□□□□ -0.62
Lire1P11260 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.16□□□□□ -0.62
Lire1P11260 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC11.16□□□□□ -0.62
Lire1P11260 Pcdhb10-201ENSMUST00000051126 2851 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Lire1P11260 Map4-204ENSMUST00000164930 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.16□□□□□ -0.62
Lire1P11260 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Lire1P11260 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Lire1P11260 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Lire1P11260 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC11.15□□□□□ -0.62
Lire1P11260 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.15□□□□□ -0.62
Lire1P11260 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Lrba-206ENSMUST00000195524 3322 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Lire1P11260 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Lire1P11260 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
Lire1P11260 Gm25214-201ENSMUST00000104573 129 ntBASIC11.15□□□□□ -0.62
Lire1P11260 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC11.15□□□□□ -0.62
Lire1P11260 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
Lire1P11260 Gm14921-201ENSMUST00000118643 908 ntBASIC11.15□□□□□ -0.62
Lire1P11260 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms