Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Gm11628-201ENSMUST00000117568 171 ntBASIC16.42■□□□□ 0.22
Usp47Q8BY87 n-R5s84-201ENSMUST00000122591 109 ntBASIC16.42■□□□□ 0.22
Usp47Q8BY87 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Gm23694-201ENSMUST00000179335 110 ntBASIC16.42■□□□□ 0.22
Usp47Q8BY87 Gm43966-201ENSMUST00000203301 612 ntBASIC16.42■□□□□ 0.22
Usp47Q8BY87 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Usp47Q8BY87 AC167022.1-201ENSMUST00000218647 1458 ntBASIC16.42■□□□□ 0.22
Usp47Q8BY87 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gm14740-201ENSMUST00000118538 1150 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gm1848-201ENSMUST00000120711 789 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gm5342-201ENSMUST00000181982 1003 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 AC154257.1-202ENSMUST00000224729 843 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gm8899-201ENSMUST00000214635 1332 ntBASIC16.41■□□□□ 0.22
Usp47Q8BY87 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp47Q8BY87 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Gm15528-201ENSMUST00000117821 864 ntBASIC16.4■□□□□ 0.22
Usp47Q8BY87 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Gm44158-201ENSMUST00000203881 505 ntBASIC16.4■□□□□ 0.22
Usp47Q8BY87 AC124433.1-201ENSMUST00000224483 1063 ntBASIC16.4■□□□□ 0.22
Usp47Q8BY87 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Gm43051-201ENSMUST00000201096 2678 ntBASIC16.4■□□□□ 0.22
Usp47Q8BY87 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp47Q8BY87 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
Usp47Q8BY87 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Mir1956-201ENSMUST00000157748 65 ntBASIC16.39■□□□□ 0.21
Usp47Q8BY87 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Gm45856-201ENSMUST00000212752 416 ntBASIC16.39■□□□□ 0.21
Usp47Q8BY87 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp47Q8BY87 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Usp47Q8BY87 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 74.5 ms