Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
RaraP11416 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC12.62□□□□□ -0.39
RaraP11416 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
RaraP11416 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.62□□□□□ -0.39
RaraP11416 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.62□□□□□ -0.39
RaraP11416 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
RaraP11416 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.62□□□□□ -0.39
RaraP11416 Gm44651-201ENSMUST00000207343 372 ntBASIC12.62□□□□□ -0.39
RaraP11416 AC134869.4-202ENSMUST00000224350 837 ntBASIC12.62□□□□□ -0.39
RaraP11416 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
RaraP11416 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
RaraP11416 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
RaraP11416 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RaraP11416 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
RaraP11416 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gm36940-201ENSMUST00000194281 2036 ntBASIC12.61□□□□□ -0.39
RaraP11416 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gm44573-201ENSMUST00000191753 2370 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gm24255-201ENSMUST00000104481 128 ntBASIC12.61□□□□□ -0.39
RaraP11416 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC12.61□□□□□ -0.39
RaraP11416 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC12.61□□□□□ -0.39
RaraP11416 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC12.61□□□□□ -0.39
RaraP11416 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.61□□□□□ -0.39
RaraP11416 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gm28937-201ENSMUST00000185413 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm29400-201ENSMUST00000187208 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm28662-201ENSMUST00000188446 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm28251-201ENSMUST00000188835 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.61□□□□□ -0.39
RaraP11416 AA914427-201ENSMUST00000193194 1166 ntBASIC12.61□□□□□ -0.39
RaraP11416 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 Gm7430-201ENSMUST00000193824 1144 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm37318-201ENSMUST00000194325 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm38017-201ENSMUST00000194768 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm37287-201ENSMUST00000195449 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm37793-201ENSMUST00000195548 695 ntBASIC12.61□□□□□ -0.39
RaraP11416 Gm6450-201ENSMUST00000200896 574 ntBASIC12.61□□□□□ -0.39
RaraP11416 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.61□□□□□ -0.39
RaraP11416 Gm18515-201ENSMUST00000219755 797 ntBASIC12.61□□□□□ -0.39
RaraP11416 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
RaraP11416 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Gm29358-202ENSMUST00000187941 3227 ntBASIC12.61□□□□□ -0.39
RaraP11416 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
RaraP11416 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
RaraP11416 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RaraP11416 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms