Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Trim54Q9ERP3 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm13384-201ENSMUST00000117166 1344 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm16397-201ENSMUST00000122201 494 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm13182-201ENSMUST00000122241 312 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm25072-201ENSMUST00000175233 235 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Mir6958-201ENSMUST00000184207 73 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm28388-201ENSMUST00000186262 437 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm28324-201ENSMUST00000187913 264 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm43058-201ENSMUST00000197645 625 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm42657-201ENSMUST00000201746 211 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm43852-201ENSMUST00000202098 917 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm2875-201ENSMUST00000211333 360 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 AC154257.1-202ENSMUST00000224729 843 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Prrxl1-205ENSMUST00000228878 723 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm5879-201ENSMUST00000089501 1209 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trim54Q9ERP3 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm11628-201ENSMUST00000117568 171 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm12795-201ENSMUST00000117594 539 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm23153-201ENSMUST00000175323 313 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm3551-201ENSMUST00000190750 664 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm37905-201ENSMUST00000195310 341 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm6108-201ENSMUST00000208365 367 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms