Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Clrn1Q8K445 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 CU062626.3-201ENSMUST00000225522 1411 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gm12857-201ENSMUST00000117678 592 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gm6039-201ENSMUST00000121667 1250 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gm27341-201ENSMUST00000183570 106 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gm38117-201ENSMUST00000194653 939 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 AC133602.1-201ENSMUST00000227510 509 ntBASIC11.04□□□□□ -0.64
Clrn1Q8K445 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
Clrn1Q8K445 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm14028-201ENSMUST00000117434 479 ntBASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm11960-201ENSMUST00000122068 925 ntBASIC11.03□□□□□ -0.64
Clrn1Q8K445 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm24990-201ENSMUST00000157406 323 ntBASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm25881-201ENSMUST00000157783 103 ntBASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm4310-201ENSMUST00000177847 889 ntBASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm28450-201ENSMUST00000187349 638 ntBASIC11.03□□□□□ -0.64
Clrn1Q8K445 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Clrn1Q8K445 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms