Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 AC129931.1-201ENSMUST00000228865 1861 ntBASIC13.96□□□□□ -0.17
Rfx1P48377 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Gm10434-201ENSMUST00000101158 471 ntBASIC13.96□□□□□ -0.17
Rfx1P48377 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.96□□□□□ -0.17
Rfx1P48377 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Gm43118-201ENSMUST00000199149 775 ntBASIC13.96□□□□□ -0.17
Rfx1P48377 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.96□□□□□ -0.17
Rfx1P48377 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.96□□□□□ -0.17
Rfx1P48377 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC13.96□□□□□ -0.17
Rfx1P48377 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC13.96□□□□□ -0.17
Rfx1P48377 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Rfx1P48377 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
Rfx1P48377 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Rfx1P48377 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Rfx1P48377 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Rfx1P48377 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Rfx1P48377 Gm5847-201ENSMUST00000178959 1595 ntBASIC13.96□□□□□ -0.18
Rfx1P48377 Gm10110-202ENSMUST00000228705 3220 ntBASIC13.96□□□□□ -0.18
Rfx1P48377 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Rfx1P48377 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.96□□□□□ -0.18
Rfx1P48377 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 AC154314.2-201ENSMUST00000223677 3502 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Gm38187-201ENSMUST00000195609 4709 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 AC127597.1-201ENSMUST00000225697 5711 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Gm25214-201ENSMUST00000104573 129 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 Gm9192-201ENSMUST00000183221 985 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.95□□□□□ -0.18
Rfx1P48377 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.95□□□□□ -0.18
Rfx1P48377 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Gm18806-201ENSMUST00000207607 1775 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Gm44207-201ENSMUST00000204568 1424 ntBASIC13.95□□□□□ -0.18
Rfx1P48377 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Rfx1P48377 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Rfx1P48377 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC13.95□□□□□ -0.18
Rfx1P48377 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Rfx1P48377 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Rfx1P48377 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Rfx1P48377 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Rfx1P48377 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Mir1247-201ENSMUST00000116706 82 ntBASIC13.94□□□□□ -0.18
Rfx1P48377 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC13.94□□□□□ -0.18
Rfx1P48377 Gm6114-201ENSMUST00000182472 968 ntBASIC13.94□□□□□ -0.18
Rfx1P48377 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.94□□□□□ -0.18
Rfx1P48377 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.94□□□□□ -0.18
Rfx1P48377 Gm6991-201ENSMUST00000218475 1178 ntBASIC13.94□□□□□ -0.18
Rfx1P48377 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Rfx1P48377 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Rfx1P48377 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Gm45206-201ENSMUST00000206885 2285 ntBASIC13.94□□□□□ -0.18
Rfx1P48377 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC13.94□□□□□ -0.18
Rfx1P48377 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.94□□□□□ -0.18
Rfx1P48377 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rfx1P48377 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms