Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Gm18198-201ENSMUST00000204986 1551 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Gm11783-201ENSMUST00000119549 885 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Gm14460-201ENSMUST00000121511 639 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Gm44506-201ENSMUST00000206278 965 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Gm4797-201ENSMUST00000219075 1283 ntBASIC13.59□□□□□ -0.23
Traf1P39428 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 Gm6903-201ENSMUST00000160509 1366 ntBASIC13.58□□□□□ -0.23
Traf1P39428 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Traf1P39428 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Traf1P39428 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
Traf1P39428 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Traf1P39428 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Gm13888-201ENSMUST00000119148 422 ntBASIC13.58□□□□□ -0.24
Traf1P39428 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Traf1P39428 CT485607.1-201ENSMUST00000216100 85 ntBASIC13.58□□□□□ -0.24
Traf1P39428 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Gm18974-201ENSMUST00000221478 1031 ntBASIC13.58□□□□□ -0.24
Traf1P39428 AC122350.1-201ENSMUST00000228135 533 ntBASIC13.58□□□□□ -0.24
Traf1P39428 AC171241.1-201ENSMUST00000228144 1166 ntBASIC13.58□□□□□ -0.24
Traf1P39428 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Traf1P39428 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Traf1P39428 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Traf1P39428 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Traf1P39428 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Traf1P39428 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC13.57□□□□□ -0.24
Traf1P39428 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Traf1P39428 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.57□□□□□ -0.24
Traf1P39428 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Traf1P39428 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC13.57□□□□□ -0.24
Traf1P39428 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Gm9192-201ENSMUST00000183221 985 ntBASIC13.57□□□□□ -0.24
Traf1P39428 Ighv5-11-201ENSMUST00000193354 371 ntBASIC13.57□□□□□ -0.24
Traf1P39428 Gm44551-201ENSMUST00000208804 171 ntBASIC13.57□□□□□ -0.24
Traf1P39428 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Gm7940-201ENSMUST00000218195 769 ntBASIC13.57□□□□□ -0.24
Traf1P39428 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.57□□□□□ -0.24
Traf1P39428 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Traf1P39428 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
Traf1P39428 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms