Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm2606-201ENSMUST00000100754 1002 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Mir692-1-201ENSMUST00000102263 109 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm12286-201ENSMUST00000119246 1002 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm13492-201ENSMUST00000119772 665 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm12036-201ENSMUST00000120008 530 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm28911-201ENSMUST00000188837 117 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm44872-201ENSMUST00000207864 420 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm2824-203ENSMUST00000226189 1228 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC9.66□□□□□ -0.86
Hmgb3O54879 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Dnmt1-202ENSMUST00000177754 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Tecta-203ENSMUST00000160940 7048 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Il16-201ENSMUST00000001792 5260 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm20715-201ENSMUST00000054781 4460 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Olfr859-203ENSMUST00000217280 9596 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Btg1-201ENSMUST00000038377 5001 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Zfp451-202ENSMUST00000044455 11876 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Arid5b-204ENSMUST00000219238 7581 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm3836-201ENSMUST00000211377 1613 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm15172-201ENSMUST00000118945 1046 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC9.65□□□□□ -0.86
Hmgb3O54879 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Mir7023-201ENSMUST00000185093 64 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 AL593843.1-201ENSMUST00000195891 145 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm7287-201ENSMUST00000205267 602 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm15823-201ENSMUST00000064305 670 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm22058-201ENSMUST00000083393 310 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm9466-201ENSMUST00000218144 2246 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Gm9544-201ENSMUST00000223349 2482 ntBASIC9.65□□□□□ -0.86
Hmgb3O54879 Tbx22-203ENSMUST00000168174 5217 ntAPPRIS P4 TSL 2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Hmgb3O54879 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC9.65□□□□□ -0.86
Hmgb3O54879 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Il1rap-202ENSMUST00000096129 4438 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Gm29358-202ENSMUST00000187941 3227 ntBASIC9.65□□□□□ -0.87
Hmgb3O54879 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC9.65□□□□□ -0.87
Hmgb3O54879 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hmgb3O54879 Sardh-202ENSMUST00000102886 4521 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 88.3 ms