Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Rfx1P48377 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Rfx1P48377 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Rfx1P48377 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Rfx1P48377 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Rfx1P48377 Gm38292-201ENSMUST00000192646 3045 ntBASIC13.99□□□□□ -0.17
Rfx1P48377 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Gm7964-201ENSMUST00000051522 1378 ntBASIC13.98□□□□□ -0.17
Rfx1P48377 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
Rfx1P48377 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Rfx1P48377 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.98□□□□□ -0.17
Rfx1P48377 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Gm6754-201ENSMUST00000117124 913 ntBASIC13.98□□□□□ -0.17
Rfx1P48377 Gm11960-201ENSMUST00000122068 925 ntBASIC13.98□□□□□ -0.17
Rfx1P48377 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Gm17150-201ENSMUST00000165577 381 ntBASIC13.98□□□□□ -0.17
Rfx1P48377 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.98□□□□□ -0.17
Rfx1P48377 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.98□□□□□ -0.17
Rfx1P48377 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Rfx1P48377 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC13.98□□□□□ -0.17
Rfx1P48377 Gm38314-201ENSMUST00000195709 625 ntBASIC13.98□□□□□ -0.17
Rfx1P48377 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Rfx1P48377 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Rfx1P48377 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Rfx1P48377 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Gm9466-201ENSMUST00000218144 2246 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Gm11531-201ENSMUST00000117614 555 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Gm11439-201ENSMUST00000118598 409 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Gm14660-201ENSMUST00000119809 575 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13.97□□□□□ -0.17
Rfx1P48377 Thoc7-209ENSMUST00000225325 765 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC13.97□□□□□ -0.17
Rfx1P48377 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC13.97□□□□□ -0.17
Rfx1P48377 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Rfx1P48377 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Rfx1P48377 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Rfx1P48377 Gm13135-201ENSMUST00000117628 3121 ntBASIC13.97□□□□□ -0.17
Rfx1P48377 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC13.96□□□□□ -0.17
Rfx1P48377 Gm3756-201ENSMUST00000169182 1355 ntBASIC13.96□□□□□ -0.17
Rfx1P48377 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Rfx1P48377 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Rfx1P48377 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Rfx1P48377 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Rfx1P48377 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Gm26684-202ENSMUST00000228229 8257 ntBASIC13.96□□□□□ -0.17
Rfx1P48377 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Rfx1P48377 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms