Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm27910-201ENSMUST00000185004 107 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Gm38151-201ENSMUST00000195085 289 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Gm9645-201ENSMUST00000197131 792 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Gm26047-202ENSMUST00000198840 115 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Gm43852-201ENSMUST00000202098 917 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Snora73b-201ENSMUST00000083419 205 ntBASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.49□□□□□ -0.41
Sf3b1Q99NB9 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm22711-201ENSMUST00000116890 133 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm13328-201ENSMUST00000120816 1020 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm24844-201ENSMUST00000158679 127 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm22138-201ENSMUST00000158748 128 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm28937-201ENSMUST00000185413 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm29400-201ENSMUST00000187208 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm28662-201ENSMUST00000188446 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm28251-201ENSMUST00000188835 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm37318-201ENSMUST00000194325 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm38017-201ENSMUST00000194768 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm37287-201ENSMUST00000195449 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm5542-201ENSMUST00000195485 1089 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm37793-201ENSMUST00000195548 695 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm43830-201ENSMUST00000198760 1067 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Map1b-203ENSMUST00000223725 2669 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Sf3b1Q99NB9 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sf3b1Q99NB9 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 78.8 ms